Welcome to LithoGraphX’s documentation!

LithoGraphX is a software to visualize, process and analyse 3D images and meshes. This documentation is organized into a reference manual describing the user interface in details and a collection of tutorials describing how to perform usual tasks.

The main website of LithoGraphX is: http://www.lithographx.org

LithoGraphX is a fork of the MorphoGraphX project.

Hint

If you have never used LithoGraphX, I recommend you start by reading the definitions and the description of the main interface. Then, you should probably read tutorials close to what you want to do.

• 1. Installation
  • 1.1. Hardware Requirements and Recommendations
  • 1.2. Install from binaries
  • 1.3. Install from source
  • 1.4. Configuring the Operating System
• 2. Principles and user Interface
  • 2.1. Definitions
  • 2.2. User Interface
• 3. Tips for Data Collection
• 4. Tutorials
  • 4.1. Loading and visualizing data
  • 4.2. Data Visualization (2)
  • 4.3. Segmenting Cells in 3D
  • 4.4. Segmenting Cells in 3D (advanced)
  • 4.5. Segmenting cells in 2D
  • 4.6. Segmenting cells from a 2D image and automated cell classification
  • 4.7. Computing a growth map
• 5. Python Macros and Scripts
  • 5.1. Python Scripts
  • 5.2. Python Macros
• 6. Frequently Asked Questions
  • 6.1. Installation
  • 6.2. Referecing and citations
• 7. What’s new?
  • 7.1. Version 1.2.0
• 8. Contributors and Licensing
  • 8.1. Contributors
  • 8.2. Past Contributors
  • 8.3. Funding Support

Indices and tables

• Index
• Module Index
• Search Page